SPPkgBuilder {AnnBuilder}R Documentation

A function to build a data pckage using Swiss-Prot protein data

Description

Given the URL to Swiss-Prot protein data, this function creates a data package with the data stored as R environment objects in the data directory

Usage

SPPkgBuilder(pkgPath, version, author, fromWeb = TRUE, url =
"ftp://ftp.ebi.ac.uk/pub/databases/swissprot/release/sprot41.dat")
getDetailV(key)
getEnvNames()
isOneToOne(envName)

Arguments

pkgPath pkgPath a character string for the path where the data package created will be stored
version version a character string for the version number of the data package to be created
author author a list with an author elementfor the name of the author of the data package and a maintainer element for the name and email address of the maintainer of the dat package to be created
fromWeb fromWeb a boolean indicating whether the data will be read from the internet or locally
url url an URL of file name to read the data from
key key a character string for the name of Swiss-Prot annotation element, e. g. "Swiss-Prot accession number"
envName envName a character string for the name of an environment object

Details

If fromWeb is FALSE, url will be the file name of a local file.

Value

This function returns NULL

Note

This function is part of the Bioconductor project at Dana-Farber Cancer Institute to provide bioinformatics functionalities through R

Author(s)

Jianhua Zhang

References

ftp://ftp.ebi.ac.uk/pub/databases/swissprot/release/sprot41.dat

See Also

ABPkgBuilder

Examples

   # No example is given considering the time required to
   #process the source data

[Package AnnBuilder version 1.4.21 Index]