print.ABQCList {AnnBuilder}R Documentation

Prints the quality control results for a given data package in a nice format

Description

AnnBuilder has a function (getDPStats) that generates some statistical data (a list) for a given data package for quality control purpose. print.ABQCList prints the results in a more readable format.

Usage

print.ABQCList(x, ...)

Arguments

x x A list object of class ABQCList that is generated by function getDPStats
... ... Other data to be included (not implemented currently)

Details

The list object contains the following elements:

name
A character string for the name of an rda file
built
A character string for a date
probeNum
An integer for the total number of probes in a given base file
numMissMatch
A vector of character strings for names of rda files whose total number of probes do not match that of a given base file
probeMissMatch
A vector of character strings for names of rda files whose probes do not match what are in a given base file
probeMapped
A vector of named integers for the total number of probes in a probe based rda file that have been mapped to data from public data sources. Names of the integers are the names of the rda files
otherMapped
A vector of named integers for the total number of probes in a non-probe based rda file that have been mapped to data from public data sources. Names of the integers are the names of the rda files

Value

No values are returned

Note

This function is only used for building data packages

Author(s)

Jianhua Zhang

See Also

getDPStats

Examples

# Create a ABQCList
x <- c(12250, 7800)
names(x) <- c("file1", "file2")
y <- c(2300, 3456)
names(y) <- c("file3", "file4")
aList <- list(name = "a test", built = date(), probeNum = 12250,
numMissMatch = c("file3", "file4"), probeMissMatch = "file2", probeMapped = x,
otherMapped = y)
class(aList) <- "ABQCList"
aList

[Package AnnBuilder version 1.4.21 Index]