reporter {Biobase}R Documentation

Example Data Frame Object for the ReporterInfo Slot

Description

The reporter object is a 500 by 1 data frame. The rows represent the 500 probe ids in the geneData data. The values in reporter are the predefined probe types for the probes. reporter is used to created the exprSet object exSet.

Usage

data(reporter)

Format

A 500 by 1 data frame

Details

There are 10 predefined probe types:

AFFX-
Quality Control (QC)
_f_
SequenceFamily
_g_
CommonGroups
_s_
SimilarityConstraint
_r_
RulesDropped
_i_
Incomplete
_b_
AmbiguousProbeSet
_l_
LongProbeSet
_at
AntiSenseTarget
_st
SenseTarget

Source

Affymetrix GeneChip Expression Analysis Data Analysis Fundamentals (http://www.affymetrix.com/Auth/support/downloads/manuals/data_analysis_fundamentals_manual.pdf)

References

~~ possibly secondary sources and usages ~~

Examples

data(reporter)
## maybe str(reporter) ; plot(reporter) ...

[Package Biobase version 1.8.0 Index]