Differential Expression via Distance Summary for Microarray Data


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Documentation for package `DEDS' version 1.0.3

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affySpikeIn Gene expression dataset from Affymetrix Spike-in Experiments
aggregateFun Aggregate Statistical Functions for DEDS
ApoA1 Gene expression dataset from the ApoA1 Experiment
comp.B Computing B-statistics for Differential Expression
comp.ebayes Computing Empirical Bayes Statistics for Differential Expression
comp.F Computing F-statistic for Differential Expression
comp.FC Computing Fold Change for Differential Expression
comp.modF Computing Moderated t-statistics for Differential Expression
comp.modt Computing Moderated t-statistics for Differential Expression
comp.SAM Computing SAM Statistics for Differential Expression
comp.stat Computing Test Statistics for Differential Expression
comp.t Computing One and Two Sample t-statistic for Differential Expression
comp.unadjp Computing permutation based unadjusted p values for each row of a matrix
DEDS DEDS Result List - class
DEDS-class DEDS Result List - class
deds.chooseTest Selection of the Most Common Statistics for Differential Expression
deds.genExtra Generating Extra Parameters for Test Statistics Functions for Differential Expression
deds.pval Differential Expression via Distance Summary of p Values from Multiple Models
deds.stat Differentail Expression via Distance Summary of Multiple Statistics
deds.stat.linkC Differentail Expression via Distance Summary of Multiple Statistics
hist Histogram for DEDS Objects
hist-methods Histogram for DEDS Objects
hist.DEDS Histogram for DEDS Objects
pairs Pairs Plot for DEDS Objects
pairs-methods Pairs Plot for DEDS Objects
pairs.DEDS Pairs Plot for DEDS Objects
qqnorm Normal Q-Q Plot for DEDS Objects
qqnorm-methods Normal Q-Q Plot for DEDS Objects
qqnorm.DEDS Normal Q-Q Plot for DEDS Objects
spikedgene Gene expression dataset from Affymetrix Spike-in Experiments
topgenes Table of Top Genes from DEDS