arrayCGH {GLAD}R Documentation

Object of Class arrayCGH

Description

Description of the object arrayCGH.

Value

The object arrayCGH is a list with at least a data.frame named arrayValues and a vector named arrayDesign. The data.frame arrayValues must contain the following fields :

Col Vector of columns coordinates.
Row Vector of rows coordinates.
... Other elements can be added.


The vector arrayDesign is composed of 4 values : c(arrayCol, arrayRow, SpotCol, SpotRow). The array CGH is represented by arrayRow*arrayCol blocs and each bloc is composed of Row*Col spots.
N.B. : Col takes the values in 1:arrayRow*SpotRow and Row takes the values in 1:arrayCol*SpotCol

Author(s)

Philippe Hupé, Philippe.Hupe@curie.fr.

See Also

glad.

Examples

data(arrayCGH)

# object of class arrayCGH

array <- list(arrayValues=array2, arrayDesign=c(4,4,21,22))
class(array) <- "arrayCGH"


[Package GLAD version 1.0.1 Index]