causton |
Yeast mRNA Expression Data |

ccCM |
Cell-Cycle Cluster Matrix |

clust2Mat |
Function to compute adjacency matrix of cluster graph given a vector of cluster memberships |

depthmatBP |
Matrices of depth of association for pairs of YEAST genes with respect to each of the BP,CC and MF ontologies of the GO database |

depthmatCC |
Matrices of depth of association for pairs of YEAST genes with respect to each of the BP,CC and MF ontologies of the GO database |

depthmatMF |
Matrices of depth of association for pairs of YEAST genes with respect to each of the BP,CC and MF ontologies of the GO database |

getpvalue |
Function to obtain P values from the Edge permutation and Node permutation tests respectively |

giaever |
Yeast Gene-Knockout Fitness Data |

makeClustM |
Make an adjacency matrix for a cluster graph |

mat2UndirG |
Change graph representations |

mRNAclusters |
Yeast mRNA Expression Data Cluster Memberships |

nNamescc |
Cell-Cycle Cluster Matrix |

permEdgesM2M |
Randomly permute edges or node labels in a graph |

permNodesM2M |
Randomly permute edges or node labels in a graph |

permPower |
Function to compute estimated probability of detecting preferential connection of intracluster nodes |

Phenoclusters |
Yeast Gene-Knockout Fitness Data Cluster Memberships |