Graph Theoretic Association Tests


[Package List] [Top]

Documentation for package `GraphAT' version 1.0.0

Help Pages

causton Yeast mRNA Expression Data
ccCM Cell-Cycle Cluster Matrix
clust2Mat Function to compute adjacency matrix of cluster graph given a vector of cluster memberships
depthmatBP Matrices of depth of association for pairs of YEAST genes with respect to each of the BP,CC and MF ontologies of the GO database
depthmatCC Matrices of depth of association for pairs of YEAST genes with respect to each of the BP,CC and MF ontologies of the GO database
depthmatMF Matrices of depth of association for pairs of YEAST genes with respect to each of the BP,CC and MF ontologies of the GO database
getpvalue Function to obtain P values from the Edge permutation and Node permutation tests respectively
giaever Yeast Gene-Knockout Fitness Data
makeClustM Make an adjacency matrix for a cluster graph
mat2UndirG Change graph representations
mRNAclusters Yeast mRNA Expression Data Cluster Memberships
nNamescc Cell-Cycle Cluster Matrix
permEdgesM2M Randomly permute edges or node labels in a graph
permNodesM2M Randomly permute edges or node labels in a graph
permPower Function to compute estimated probability of detecting preferential connection of intracluster nodes
Phenoclusters Yeast Gene-Knockout Fitness Data Cluster Memberships