Heterogeneous error model for analysis of microarray data


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Documentation for package `HEM' version 1.0.4

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am.tran AM transformation for LPE
base.error.Olig Baseline error estimation for oligonucleotide arrays
boot.base.error.Olig Baseline error bootstrap estimation for oligonucleotide arrays
fixbound.predict.smooth.spline Prediction using smoothing spine
hem Heterogeneous Error Model (HEM) for Microarray Data
hem.eb.prior Empirical Bayes (EB) Prior Specification
hem.fdr FDR Evaluation
hem.null.one Generation of null data
hem.null.two Generation of null data
hem.preproc Preprocessing
immune Gene Expression Data for a mouse immune response study
mubcp Gene expression data for mouse B cell development
nonpar.error.Olig Baseline error nonparametric estimation for oligonucleotide arrays
nonpar.rep.error.Olig Baseline error nonparametric estimation for oligonucleotide arrays
par.error.Olig Baseline error parametric estimation for oligonucleotide arrays
par.rep.error.Olig Baseline error parametric estimation for oligonucleotide arrays
pbrain Gene expression data for primate brains
permut Permutation
plotsample Plotting MCMC samples for diagnosis
quant.norm Quantile normalization
quant.normalize Quantile normalization
radiate Gene expression data for ionizing radiation data