A package that deals with SAGE libraries


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Documentation for package `SAGElyzer' version 1.4.2

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butsInTBox A function that is the main interface for SAGElyzer
calNormFact Functions to merge SAGE libraries based on unique SAGE tags
chunkKNN Function to filter out the k nearest neighbors for a given tag
closeConn Functions for database connection and manipulation
con4Unix Functions for database connection and manipulation
con4Win Functions for database connection and manipulation
doTag2UG Annotating SAGE tags using data from public databases
doUG2Tag Annotating SAGE tags using data from public databases
ENV Functions to support the widgets of SAGElyzer
env2File Annotating SAGE tags using data from public databases
executeQuery Functions for database connection and manipulation
findNeighborTags Function to filter out the k nearest neighbors for a given tag
findNG4Tag Functions to support the widgets of SAGElyzer
GEOSAGEWidget Widgets that provide the interface
getBinding Functions to support the widgets of SAGElyzer
getColNames Function to filter out the k nearest neighbors for a given tag
getColSQL Functions to merge SAGE libraries based on unique SAGE tags
getColumnNames Functions that provide an interface to allow users to query a SAGE library database table
getDBArgs Functions to support the widgets of SAGElyzer
getDefaults Functions to support the widgets of SAGElyzer
getDMProc A function that is the main interface for SAGElyzer
getFileNames Automatically downloads SAGE libraries from NCBI
getGEOSAGE Automatically downloads SAGE libraries from NCBI
getKNN Function to filter out the k nearest neighbors for a given tag
getKNNProc A function that is the main interface for SAGElyzer
getLibCounts Functions to support the widgets of SAGElyzer
getLibInfo Functions to merge SAGE libraries based on unique SAGE tags
getLibNNum Functions to merge SAGE libraries based on unique SAGE tags
getMapFileName Annotating SAGE tags using data from public databases
getNormFactor Functions that get normalization factors for SAGE libraries
getSAGEKNN Functions to support the widgets of SAGElyzer
getSAGESQL Function to filter out the k nearest neighbors for a given tag
getSampleId Automatically downloads SAGE libraries from NCBI
getSLyzerArgs Functions to support the widgets of SAGElyzer
getTableNames Functions that provide an interface to allow users to query a SAGE library database table
getTag Functions to support the widgets of SAGElyzer
getTargetRow Function that retrieves data from selected SAGE libraries for a given SAGE tag
getTasks A function that is the main interface for SAGElyzer
getTaskTips A function that is the main interface for SAGElyzer
getTotalRNum Function to filter out the k nearest neighbors for a given tag
getUniqTags Functions to merge SAGE libraries based on unique SAGE tags
getUnixDBArgs Functions to support the widgets of SAGElyzer
getWinDBArgs Functions to support the widgets of SAGElyzer
KNNArgsWidget A function that is the main interface for SAGElyzer
linkTag2UG Functions to support the widgets of SAGElyzer
makeConnection Functions for database connection and manipulation
mapFile2Tag Functions to merge SAGE libraries based on unique SAGE tags
mapLib2File Functions to support the widgets of SAGElyzer
mapSAGE2UG Functions to support the widgets of SAGElyzer
mapSAGEWidget Widgets that provide the interface
mergeSAGE Functions to merge SAGE libraries based on unique SAGE tags
mergeSAGEWidget Widgets that provide the interface
modSLyzerArgs Functions to support the widgets of SAGElyzer
noChunkKNN Function to filter out the k nearest neighbors for a given tag
parseSAGE Automatically downloads SAGE libraries from NCBI
procSAGE Functions to support the widgets of SAGElyzer
query4Unix Functions for database connection and manipulation
queryInfoDB Functions that get normalization factors for SAGE libraries
querySAGE Functions that provide an interface to allow users to query a SAGE library database table
remapTagNUG Functions to support the widgets of SAGElyzer
runSLyzer Functions to support the widgets of SAGElyzer
SAGE4Unix Widgets that provide the interface
SAGEFromGEO Functions to support the widgets of SAGElyzer
SAGELyzer Function to filter out the k nearest neighbors for a given tag
SAGELyzerArgs Functions to support the widgets of SAGElyzer
SAGEMapper Annotating SAGE tags using data from public databases
SAGEToolTips A list that maps SAGE task or procedure names to tips
SAGEWidget A function that is the main interface for SAGElyzer
selectLibs Functions to support the widgets of SAGElyzer
setKNNArgs Functions to support the widgets of SAGElyzer
setSLyzerArgs Functions to support the widgets of SAGElyzer
showDBError Functions to support the widgets of SAGElyzer
tableExists Functions for database connection and manipulation
writeSAGE2DB Functions to merge SAGE libraries based on unique SAGE tags
writeSAGE4Unix Functions to merge SAGE libraries based on unique SAGE tags
writeSAGE4Win Functions to merge SAGE libraries based on unique SAGE tags
writeSAGECounts Functions to merge SAGE libraries based on unique SAGE tags
writeSAGEKNN Functions to support the widgets of SAGElyzer
writeSLyzerArgs Functions to support the widgets of SAGElyzer