butsInTBox | A function that is the main interface for SAGElyzer |

calNormFact | Functions to merge SAGE libraries based on unique SAGE tags |

chunkKNN | Function to filter out the k nearest neighbors for a given tag |

closeConn | Functions for database connection and manipulation |

con4Unix | Functions for database connection and manipulation |

con4Win | Functions for database connection and manipulation |

doTag2UG | Annotating SAGE tags using data from public databases |

doUG2Tag | Annotating SAGE tags using data from public databases |

ENV | Functions to support the widgets of SAGElyzer |

env2File | Annotating SAGE tags using data from public databases |

executeQuery | Functions for database connection and manipulation |

findNeighborTags | Function to filter out the k nearest neighbors for a given tag |

findNG4Tag | Functions to support the widgets of SAGElyzer |

GEOSAGEWidget | Widgets that provide the interface |

getBinding | Functions to support the widgets of SAGElyzer |

getColNames | Function to filter out the k nearest neighbors for a given tag |

getColSQL | Functions to merge SAGE libraries based on unique SAGE tags |

getColumnNames | Functions that provide an interface to allow users to query a SAGE library database table |

getDBArgs | Functions to support the widgets of SAGElyzer |

getDefaults | Functions to support the widgets of SAGElyzer |

getDMProc | A function that is the main interface for SAGElyzer |

getFileNames | Automatically downloads SAGE libraries from NCBI |

getGEOSAGE | Automatically downloads SAGE libraries from NCBI |

getKNN | Function to filter out the k nearest neighbors for a given tag |

getKNNProc | A function that is the main interface for SAGElyzer |

getLibCounts | Functions to support the widgets of SAGElyzer |

getLibInfo | Functions to merge SAGE libraries based on unique SAGE tags |

getLibNNum | Functions to merge SAGE libraries based on unique SAGE tags |

getMapFileName | Annotating SAGE tags using data from public databases |

getNormFactor | Functions that get normalization factors for SAGE libraries |

getSAGEKNN | Functions to support the widgets of SAGElyzer |

getSAGESQL | Function to filter out the k nearest neighbors for a given tag |

getSampleId | Automatically downloads SAGE libraries from NCBI |

getSLyzerArgs | Functions to support the widgets of SAGElyzer |

getTableNames | Functions that provide an interface to allow users to query a SAGE library database table |

getTag | Functions to support the widgets of SAGElyzer |

getTargetRow | Function that retrieves data from selected SAGE libraries for a given SAGE tag |

getTasks | A function that is the main interface for SAGElyzer |

getTaskTips | A function that is the main interface for SAGElyzer |

getTotalRNum | Function to filter out the k nearest neighbors for a given tag |

getUniqTags | Functions to merge SAGE libraries based on unique SAGE tags |

getUnixDBArgs | Functions to support the widgets of SAGElyzer |

getWinDBArgs | Functions to support the widgets of SAGElyzer |

KNNArgsWidget | A function that is the main interface for SAGElyzer |

linkTag2UG | Functions to support the widgets of SAGElyzer |

makeConnection | Functions for database connection and manipulation |

mapFile2Tag | Functions to merge SAGE libraries based on unique SAGE tags |

mapLib2File | Functions to support the widgets of SAGElyzer |

mapSAGE2UG | Functions to support the widgets of SAGElyzer |

mapSAGEWidget | Widgets that provide the interface |

mergeSAGE | Functions to merge SAGE libraries based on unique SAGE tags |

mergeSAGEWidget | Widgets that provide the interface |

modSLyzerArgs | Functions to support the widgets of SAGElyzer |

noChunkKNN | Function to filter out the k nearest neighbors for a given tag |

parseSAGE | Automatically downloads SAGE libraries from NCBI |

procSAGE | Functions to support the widgets of SAGElyzer |

query4Unix | Functions for database connection and manipulation |

queryInfoDB | Functions that get normalization factors for SAGE libraries |

querySAGE | Functions that provide an interface to allow users to query a SAGE library database table |

remapTagNUG | Functions to support the widgets of SAGElyzer |

runSLyzer | Functions to support the widgets of SAGElyzer |

SAGE4Unix | Widgets that provide the interface |

SAGEFromGEO | Functions to support the widgets of SAGElyzer |

SAGELyzer | Function to filter out the k nearest neighbors for a given tag |

SAGELyzerArgs | Functions to support the widgets of SAGElyzer |

SAGEMapper | Annotating SAGE tags using data from public databases |

SAGEToolTips | A list that maps SAGE task or procedure names to tips |

SAGEWidget | A function that is the main interface for SAGElyzer |

selectLibs | Functions to support the widgets of SAGElyzer |

setKNNArgs | Functions to support the widgets of SAGElyzer |

setSLyzerArgs | Functions to support the widgets of SAGElyzer |

showDBError | Functions to support the widgets of SAGElyzer |

tableExists | Functions for database connection and manipulation |

writeSAGE2DB | Functions to merge SAGE libraries based on unique SAGE tags |

writeSAGE4Unix | Functions to merge SAGE libraries based on unique SAGE tags |

writeSAGE4Win | Functions to merge SAGE libraries based on unique SAGE tags |

writeSAGECounts | Functions to merge SAGE libraries based on unique SAGE tags |

writeSAGEKNN | Functions to support the widgets of SAGElyzer |

writeSLyzerArgs | Functions to support the widgets of SAGElyzer |