SAGEWidget {SAGElyzer}R Documentation

A function that is the main interface for SAGElyzer

Description

This function serves as the main interface for SAGElyzer, which contains buttons for making a connection to a database and invokes all the tasks and procedures to take to complete a task.

Usage

SAGEWidget()
getTasks()
getDMProc(base, TBox, status)
getKNNProc(base, TBox, status)
butsInTBox(base, TBox, status, butList, clear = FALSE)
getTaskTips(task)
KNNArgsWidget()

Arguments

base base a tkwin object that can be a parent of other widgets (e.g. window, frame)
TBox TBox a tkwin object that can be used as a status bar
status status a character string for the status of a process
butList butList a list of chracter strings for function names. The name of the list will be used to create buttons baring the same name and values will be called when corresponding buttons are pressed
clear clear a boolean indicating if a status bar will be cleard before updating
task task a character string for the name of a task of interest

Details

Each task may involve several procedures that require user inputs for arguments. Blanks need to be filled. Default values are provided whereever it is possible. Defaults are advised to be used if a user are not sure about what to enter for inputs.

SAGEWidget calls the other functions listed in this man page.

Value

This function returns invisible().

Note

This function is part of the Bioconductor poject at Dana-Farber Cancer Institute to provide Bioinformatics functionalities through R

Author(s)

Jianhua Zhang

References

http://www.ncbi.nlm.nih.gov/SAGE/

Examples

if(interactive()){
    SAGEWidget()
}

[Package SAGElyzer version 1.4.2 Index]