Graphics Toolbox for Assessment of Affymetrix Expression Measures


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Documentation for package `affycomp' version 1.4.3

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affycomp Assessment functions
affycomp.compfig2 Auxiliary functions to create comparitive Figures
affycomp.compfig2b Auxiliary functions to create comparitive Figures
affycomp.compfig3 Auxiliary functions to create comparitive Figures
affycomp.compfig4a Auxiliary functions to create comparitive Figures
affycomp.compfig4b Auxiliary functions to create comparitive Figures
affycomp.compfig4c Auxiliary functions to create comparitive Figures
affycomp.compfig5a Auxiliary functions to create comparitive Figures
affycomp.compfig5b Auxiliary functions to create comparitive Figures
affycomp.compfig5c Auxiliary functions to create comparitive Figures
affycomp.compfig5cde Auxiliary functions to create comparitive Figures
affycomp.compfig5d Auxiliary functions to create comparitive Figures
affycomp.compfig5e Auxiliary functions to create comparitive Figures
affycomp.compfig7 SD Assessment Functions
affycomp.compfigs Assessment Plots
affycomp.compfigs.auxiliary Auxiliary functions to create comparitive Figures
affycomp.compfigs.calls Assessment Plots
affycomp.figure.calls Assessment Plots
affycomp.figure1 Auxiliary functions to create Figures
affycomp.figure1b Auxiliary functions to create Figures
affycomp.figure2 Auxiliary functions to create Figures
affycomp.figure2b Auxiliary functions to create Figures
affycomp.figure3 Auxiliary functions to create Figures
affycomp.figure4a Auxiliary functions to create Figures
affycomp.figure4b Auxiliary functions to create Figures
affycomp.figure4c Auxiliary functions to create Figures
affycomp.figure5a Auxiliary functions to create Figures
affycomp.figure5b Auxiliary functions to create Figures
affycomp.figure5c Auxiliary functions to create Figures
affycomp.figure5d Auxiliary functions to create Figures
affycomp.figure5e Auxiliary functions to create Figures
affycomp.figure6a Auxiliary functions to create Figures
affycomp.figure6b Auxiliary functions to create Figures
affycomp.figure7 SD Assessment Functions
affycomp.figures Assessment Plots
affycomp.figures.auxiliary Auxiliary functions to create Figures
affycompPlot Assessment Plots
affycompTable Expression Assessment Table
assessAll Assessment functions
assessDilution Assessment functions for Dilution Data
assessFC Assessment functions for Spike In Data
assessFC2 Assessment functions for Spike In Data
assessLS New Assessment functions for Spike In Data
assessMA Assessment functions for Spike In Data
assessMA2 New Assessment functions for Spike In Data
assessSD SD Assessment functions
assessSignal Assessment functions for Spike In Data
assessSpikeIn Assessment functions for Spike In Data
assessSpikeIn2 New Assessment functions for Spike In Data
assessSpikeInSD New Assessment functions for Spike In Data
dilution.phenodata Phenotypic Information for Dilution Study
exprset.log Take log base 2 of Expression
hgu133a.spikein.phenodata phenotypic information for HGU133A spike in study
hgu133a.spikein.xhyb Cross hybridizers
lw.sd.assessment An example of the result of an SD assessment
mas5.assessment An example of the result of the assessments
mas5.assessment2 An example of the result of the assessments
read.dilution Read Expression Date Sets
read.newspikein Read Expression Date Sets
read.spikein Read Expression Date Sets
readin Read Expression Date Sets
remove.hgu133a.xhyb Remove crosshybridizers
rma.assessment An example of the result of an assessment
rma.assessment2 An example of the result of an assessment
rma.sd.assessment An example of the result of an SD assessment
SD SD Assessment Functions
spikein.phenodata phenotypic information for spike in study
tableAll Expression Assessment Table
tableDilution Expression Assessment Table
tableFC Expression Assessment Table
tableFC2 Expression Assessment Table
tableLS Expression Assessment Table
tableMA2 Expression Assessment Table
tableOverallSNR Expression Assessment Table
tableRanks Expression Assessment Table
tableSD SD Assessment Functions
tableSignal Expression Assessment Table
tableSpikeInSD Expression Assessment Table