SD {affycomp}R Documentation

SD Assessment Functions

Description

These functions create assessments, figures, and tables for expression standard errors

Usage

affycomp.figure7(l,main="Figure 7")
affycomp.compfig7(l,method.names=as.character(1:length(l)),
                  main="Figure 7")
tableSD(l,method.names=NULL)

Arguments

l a list of lists with the necessary components to create the Figure. See details.
method.names a character vector with the names of the expression measures methodologies being compared.
main title of the Figure.

Details

This uses the dilution data. The exprsets need to have standard error estimates in the se.exprs slot. Read the vignette for more details. The functions work similarly to those assessing expression measures.

All these files need the result of assessSD

Value

Depends on the call.

Author(s)

Rafael A. Irizarry

Examples

data(rma.sd.assessment) ##this was produced with affycomp.assess
data(lw.sd.assessment) ##this one too
affycomp.compfig7(list(rma.sd.assessment,lw.sd.assessment))
affycomp.figure7(rma.sd.assessment)

[Package affycomp version 1.4.3 Index]