assessAll {affycomp}R Documentation

Assessment functions

Description

Assessment functions. Takes a couple of exprSet-class, one for spike in another for the dilution and returns a list with necessary information to create assessment plots.

Usage

assessAll(d,s,method.name=NULL,verbose=TRUE)

affycomp(d,s,method.name=NULL,verbose=TRUE,return.it=TRUE)

Arguments

d An exprSet-class containing the exrpession measures for the Gene Logic's dilution experiment.
s An exprSet-class containing expression measures for the Affymetrix's spike-in experiment.
method.name Name of expression measure being assessed.
verbose verbosity flag.
return.it if TRUE returns assessment lists.

Details

assessAll performs assessments for Figures 1-6. It is a wrapper for assessDilution and assessSpikeIn.

affycomp is a wrapper that does it all... including the plottitng and creation of table.

Value

Lists with the necessary information to make the Figures.

Author(s)

Rafael A. Irizarry


[Package affycomp version 1.4.3 Index]