Probe Dependent Nearest Neighbours (PDNN) for the affy package


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Documentation for package `affypdnn' version 1.1-0

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affypdnn Position Dependant Nearest Neighbors model for affy
chiptype.pdnn.params Chip-type specific data
expressopdnn Position Dependant Nearest Neighbors model for affy
find.params.pdnn A function to find the experiment specific PDNN parameters
generateExprVal.method.pdnn Compute PM correction and summary expression value
hgu95av2.pdnn.params Chip-type specific data
matplotProbesPDNN Plot the PDNN computed probe intensities
pdnn-energy-parameter_hg-u95av2 Chip-type specific data
pdnn.params.chiptype A function to fit PDNN parameters
pdnn.scalevalue.exprSet Position Dependant Nearest Neighbors model for affy
pmcorrect.pdnn Compute PM correction and summary expression value
pmcorrect.pdnnpredict Compute PM correction and summary expression value
transform.ProbeSet A function to tranform a ProbeSet