aafGO-class {annaffy}R Documentation

Class aafGO, a class for gene ontology ids

Description

An abstraction for gene ontology ids from Bioconductor data packages. This class is actually extends aafList and holds aafGOItem objects which have the actual annotation data.

Objects from the Class

Objects are generally created by the aafGO constructor. Objects can also be created manually by calls of the form new("aafGO", list(goitems)).

Slots

.Data:
Object of class list

Extends

Class aafList, from data part.

Methods

getText
(aafGO): Returns a comma delimeted list of the individual aafGOItem objects.
getURL
(aafGO): Returns a single URL to an AmiGO page which displays all the gene ontology identifiers in an hierarchical listing.
getHTML
(aafGO): Returns an HTML representation of each of the individual aafGOItem objects, concatenated together.
getTD
(aafGO): Returns an HTML table cell representation with the class set to "aafGO".
getCSS
(aafGOItem): Returns a line of CSS that indents GOItem paragraphs.

Author(s)

Colin A. Smith, annaffy@colinsmith.org

See Also

aafGO, aafGOItem, aafList


[Package annaffy version 1.2.0 Index]