aafGOItem-class {annaffy}R Documentation

Class aafGOItem, a class for gene ontology id elements

Description

An abstraction for gene ontology id elements from Bioconductor data packages. Multiple instances of this class are held by the wrapper class aafGO.

Objects from the Class

Objects are generally created by the aafGO constructor. Objects can also be created manually by calls of the form new("aafGOItem", id, name, type).

Slots

id:
Object of class character containing GO id
name:
Object of class character containing textual name
type:
Object of class character containing GO subtype
evid:
Object of class character containing GO evidence code

Methods

getText
(aafGOItem): Returns textual representation formatted "id: name".
getURL
(aafGOItem): Returns a URL to the corresponding gene ontology entry on AmiGO.
getHTML
(aafGOItem): Returns an HTML representation including the URL link, gene ontology name, and rollover subtype.

Author(s)

Colin A. Smith, annaffy@colinsmith.org

See Also

aafGO-class, aafGO


[Package annaffy version 1.2.0 Index]