qualityScore {arrayQuality}R Documentation

Quality Control score for general hybridization

Description

This function returns, for each quality measure, the percentage of reference slides measures which are below the tested slide values. For more details on this score, refer to the online manual.

Usage

qualityScore(slidequality, organism = c("Mm", "Hs"), reference =
NULL)

Arguments

slidequality A quality matrix from slideQuality.
reference A matrix resulting from globalQuality, to be used as reference table to compare slides. If 'NULL', the default table corresponding to organism will be used. See details for more information.
organism A "character" string naming the organism genome printed on the array, either "Mm" or "Hs". By default, organism is set to "Mm". It is used to retrieve the corresponding reference tables.

Value

A matrix of percentages.

Author(s)

Agnes Paquet


[Package arrayQuality version 1.0.7 Index]