readGPR {arrayQuality}R Documentation

Reading GenePix gpr file

Description

This component reads a GenePix file (.gpr) and returns columns used for quality control.

Usage

readGPR(fnames = NULL, path= ".", DEBUG=FALSE, skip = 0, sep ="\t",
quote="\"", ...)

Arguments

fnames A "character" string naming the input file.
path a "character" string representing the data directory. By default this is set to the current working directory (".").
DEBUG If 'TRUE', debug statements are printed.
skip Number of lines to skip in the gpr files.
sep A "character" string defining the type of separation for the columns in the gpr files.
quote A "character" string defining the type of quote in the gpr files.
... additional arguments.

Value

A list of vectors containing information extracted from the GenePix file

Author(s)

Agnes Paquet

See Also

slideQuality, gpQuality, globalQuality

Examples

datadir <- system.file("gprQCData", package="arrayQuality")
if (interactive())
gprData <- readGPR(fnames="9Mm137.gpr", path=datadir)

[Package arrayQuality version 1.0.7 Index]