scaleRefTable {arrayQuality}R Documentation

General hybridization quality scaling

Description

This function helps you scale quality measures in order to compare them on the same plot. It is used on reference slides to create a look-up table, which will be used to scale other slides.

Usage

scaleRefTable(reference=NULL, organism=c("Mm", "Hs"))

Arguments

organism A "character" string naming the organism genome printed on the array, either "Mm" or "Hs". By default, organism is set to "Mm". It is used to retrieve the corresponding reference tables.
reference A matrix resulting from globalQuality, to be used as reference table to compare slides. If 'NULL', the default table corresponding to organism will be used.

Value

A matrix containing median and iqr for each quality measure for tested slides.

Author(s)

Agnes Paquet

See Also

gpQuality, globalQuality, qualBoxplot


[Package arrayQuality version 1.0.7 Index]