slideQuality {arrayQuality}R Documentation

Quality Control statistics for general hybridization

Description

This component uses data extracted from GenePix file to provide quality control statistics.

Usage

slideQuality(gprData = NULL, controlMatrix = controlCode, controlId = c("ID", "Name"), DEBUG = FALSE,...)

Arguments

gprData A list of vector, results from readGPR, containing information extracted from the gpr file.
controlMatrix A matrix defining control status information.
controlId Character string. Name of the column of the gpr file used to define controls.
DEBUG If 'TRUE', debug statements are printed.
... additional arguments

Value

A matrix of numbers.

Author(s)

Agnes Paquet

See Also

gpQuality, globalQuality, readGPR

Examples

datadir <- system.file("gprQCData", package="arrayQuality")
if (interactive())
{
gprdata <- readGPR(fnames="9Mm137.gpr", path=datadir)
results <- slideQuality(gprdata)
}

[Package arrayQuality version 1.0.7 Index]