Bayesian Interval Mapping Diagnostics


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Documentation for package `bim' version 1.01-1

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bim.effects Bayesian QTL map of loci and effects
bim.fdr Bayesian False Discovery Rate for QTL mapping
bim.model Bayesian model selection for number and pattern of QTL across genome
bim.nqtl Bayesian model selection for number and pattern of QTL across genome
bim.pattern Bayesian model selection for number and pattern of QTL across genome
bim.qtl Bayesian QTL estimation and mapping of loci
bmapqtl.options Options Settings for BmapQTL
Bnapus Cross structure for complete Brassica napus data
fisch Eight QTL Stephens and Fisch simulated data
plot.bim Diagnostics plots for Bayesian interval mapping
plot.bim.diag Marginal and model-conditional summaries of Bayesian interval mapping diagnostics
plot.bim.effects Bayesian QTL map of loci and effects
plot.bim.fdr Bayesian False Discovery Rate for QTL mapping
plot.bim.loci Jittered plot of Bayesian QTL loci samples by chromosome
plot.bim.mcmc Bayesian MCMC sequence plots for burnin and iterations.
plot.bim.model Graphical model assessment for Bayesian interval mapping
plot.bim.qtl Bayesian QTL estimation and mapping of loci
read.bim Read samples from WinQTL output
read.bmapqtl Read and write options for WinQTL
run.bmapqtl Run Bmapqtl reversible jump MCMC
subset.bim Subsetting Bayesian interval mapping data
summary.bim Summary of Bayesian interval mapping samples
vern Eight week vernalization data for Brassica napus
verngeo.bim Eight week vernalization data for Brassica napus
vernpois.bim Eight week vernalization data for Brassica napus
write.bmapqtl Read and write options for WinQTL