Bnapus {bim}R Documentation

Cross structure for complete Brassica napus data

Description

Contains genotypes and phenotypes for Brassica napus study, including 0- 4- and 8-week vernalization, survival, and 19 chromosomes.

Usage

data(Bnapus)

Format

See read.cross in library(qtl) for format.

Source

Thomas C. Osborn (mailto:tcosborn@facstaff.wisc.edu), Department of Agronomy, UW-Madison (http://agronomy.wisc.edu).

References

  • http://www.stat.wisc.edu/~yandell/qtl/data/osborn/Bnapus
  • Ferreira ME, Satagopan J, Yandell BS, Williams PH, Osborn TC (1995) Mapping loci controlling vernalization requirement and flowering time in Brassica napus. Theor Appl Genet 90: 727-732. [original source and analysis]
  • JM Satagopan, BS Yandell, MA Newton and TC Osborn (1996) Markov chain Monte Carlo approach to detect polygene loci for complex traits. Genetics 144: 805-816. http://www.genetics.org/cgi/content/abstract/144/2/805 [first MCMC for experimental crosses; analysis of B. napus N2=LG9; see vern data]
  • Kole C, Thorman CE, Karlsson BH, Palta JP, Gaffney P, Yandell BS, Osborn TC (2001) Comparative mapping of loci controlling winter survival and related traits in oilseed Brassica rapa and B. napus. Molecular Breeding 1: 329-339. [refined map and reanalysis]

    See Also

    read.cross,plot.bim

    Examples

    data(Bnapus)
    
    summary(Bnapus)
    plot(Bnapus)
    ## Not run: 
    Bnapus.bim = run.bmapqtl(Bnapus,"log10flower8")
    ## End(Not run)
    

    [Package bim version 1.01-1 Index]