plot.bim {bim}R Documentation

Diagnostics plots for Bayesian interval mapping

Description

Diagnostic plots highlight putative QTL loci and effects as well as providing graphical model assessment tools.

Usage

plot.bim(x, cross, nqtl=1, pattern=NULL, exact=FALSE, ... )

Arguments

x object of class bim
cross corresponding object of class cross
nqtl subset on number of QTL
pattern subset on chromosome pattern of QTL
exact subset on exact pattern or number of QTL if true
... graphical parameters can be given as arguments to plot

Details

Import object cross using read.cross and simulate Bayesian interval mapping sample object x using run.bmapqtl, respectively. This routine creates five plots via calls to several other plot routines for bim data.

Author(s)

Brian S. Yandell, yandell@stat.wisc.edu

References

http://www.stat.wisc.edu/~yandell/qtl/software/Bmapqtl

See Also

plot,read.cross,run.bmapqtl, plot.bim.mcmc, plot.bim.loci, plot.bim.model, plot.bim.effects, plot.bim.diag

Examples

data( vern )
data( verngeo.bim )

plot.bim( verngeo.bim, vern )

[Package bim version 1.01-1 Index]