summary.bim {bim}R Documentation

Summary of Bayesian interval mapping samples

Description

Quick summary of Bayesian interval mapping samples.

Usage

summary.bim( object, ... )
summary.bim.model( object, ... )
summary.bim.qtl( object, ... )

Arguments

object object of class bim (from run.bmapqtl), bim.model (from bim.model), or bim.qtl (from bim.qtl or bim.effects)
... additional arguments to summary

Author(s)

Brian S. Yandell, yandell@stat.wisc.edu

References

http://www.stat.wisc.edu/~yandell/qtl/software/Bmapqtl

See Also

run.bmapqtl,bim.model,bim.qtl, bim.effects

Examples

data( verngeo.bim )

summary( verngeo.bim )
verngeo.model <- bim.model( verngeo.bim )
summary( verngeo.model )
## estimate QTL density and locate peak(s)
verngeo.qtl <- bim.qtl( verngeo.bim )
## augment bim.qtl with estimates of effects
verngeo.qtl <- bim.effects( verngeo.bim, qtl = verngeo.qtl )
## same idea but with just one call
verngeo.qtl <- bim.effects( verngeo.bim )

[Package bim version 1.01-1 Index]