plot.mcmc {coda}R Documentation

Summary plots of mcmc objects

Description

plot.mcmc summarizes an mcmc or mcmc.list object with a trace of the sampled output and a density estimate for each variable in the chain.

Usage

## S3 method for class 'mcmc':
plot(x, trace = TRUE, density = TRUE, smooth = TRUE, bwf,
        auto.layout = TRUE, ask = TRUE, ...)

Arguments

x an object of class mcmc or mcmc.list
trace Plot trace of each variable
density Plot density estimate of each variable
smooth Draw a smooth line through trace plots
bwf Bandwidth function for density plots
auto.layout Automatically generate output format
ask Prompt user before each page of plots
... Further arguments

Author(s)

Martyn Plummer

See Also

densplot, traceplot.


[Package coda version 0.8-3 Index]