expression density diagnostics


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Documentation for package `edd' version 1.8.0

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B28 Class "eddDist"
B82 Class "eddDist"
CDFname Class "eddDist"
CDFname,eddDist-method Class "eddDist"
centerScale center and scale a vector to zero median, unit mad
CS1 Class "eddDist"
ctr center and scale a vector to zero median, unit mad
dmix1n create and store reference distributions for edd
dmix2n create and store reference distributions for edd
dmixnorm Class "eddDist"
edd new expression density diagnostics interface
eddDist-class Class "eddDist"
eddDistList Class "eddDist"
eddObsolete expression density diagnostics:
flatQQNorm QQ difference plot
flatQQNormY QQ difference plot
fq.matrows expression density diagnostics:
genName Class "eddDist"
genName,eddDist-method Class "eddDist"
latEDtable use latex tags for dimnames of table created from edd classification
latexTag Class "eddDist"
latexTag,eddDist-method Class "eddDist"
LN01 Class "eddDist"
Mad Class "eddDist"
Mad,eddDist-method Class "eddDist"
makeCandmat.raw create and store reference distributions for edd
makeCandmat.theor expression density diagnostics:
maxKSp classify densities by maximum KS p-value
med Class "eddDist"
med,eddDist-method Class "eddDist"
MIXN1 Class "eddDist"
MIXN2 Class "eddDist"
mkt expression density diagnostics:
N01 Class "eddDist"
parms Class "eddDist"
parms,eddDist-method Class "eddDist"
plotED visualize an eddDist object
plotlim Class "eddDist"
plotlim,eddDist-method Class "eddDist"
pmix1n create and store reference distributions for edd
pmix2n create and store reference distributions for edd
pmixnorm Class "eddDist"
qfName Class "eddDist"
qfName,eddDist-method Class "eddDist"
qfun Class "eddDist"
qfun,eddDist-method Class "eddDist"
qmix1n create and store reference distributions for edd
qmix2n create and store reference distributions for edd
qmixnorm Class "eddDist"
rmixnorm create and store reference distributions for edd
rmixnorm.alt Class "eddDist"
s.rmix1norm expression density diagnostics:
s.rmix2norm expression density diagnostics:
stub Class "eddDist"
stub,eddDist-method Class "eddDist"
T3 Class "eddDist"
tag Class "eddDist"
tag,eddDist-method Class "eddDist"
testcl expression density diagnostics:
testVec Class "eddDist"
testVec,eddDist-method Class "eddDist"
testVec,numeric,eddDist,logical-method Class "eddDist"
U01 Class "eddDist"