Background Adjustment Using Sequence Information


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Documentation for package `gcrma' version 2.2.0

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affinity.spline.coefs Spline coefficients for estimation of affinity from probe sequence
average.for.PAV Estimation of non-specific Binding Background Parameters
base.profiles Probe Affinity computation
bg.adjust.affinities Background adjustment with sequence information (internal function)
bg.adjust.constant Background adjustment with sequence information (internal function)
bg.adjust.fullmodel Background adjustment with sequence information (internal function)
bg.adjust.gcrma GCRMA background adjust (internal function)
bg.adjust.mm Background adjustment with sequence information (internal function)
bg.adjust.optical Background adjustment with sequence information (internal function)
bg.parameters.ns Estimation of non-specific Binding Background Parameters
check.probes Probe Affinity computation
compute.affinities Probe Affinity computation
compute.affinity.coef Probe Affinity computation
gcrma Robust Multi-Array expression measure using sequence information
gcrma.bg.transformation Robust Multi-Array expression measure using sequence information
gcrma.engine GCRMA background adjust engine(internal function)
gcrma.engine2 GCRMA background adjust engine(internal function)
just.gcrma Compute GCRMA Directly from CEL Files
justGCRMA Compute GCRMA Directly from CEL Files
left.sigma Estimation of non-specific Binding Background Parameters
PAV Estimation of non-specific Binding Background Parameters
plotBaseProfiles Probe Affinity computation