bg.parameters.ns {gcrma}R Documentation

Estimation of non-specific Binding Background Parameters

Description

An internal function to be used by gcrma

Usage

bg.parameters.ns(x,affinities,affinities2,affinities3)

Arguments

x PM or MM intensities after optical background correction, before non-specific-binding correction.
affinities Probe affinities for probes with known sequences.Used to estimate the function between non-specific binding and affinities.
affinities2 Probe affinities for the probes whoes expected non-specific binding intensity is to be predicted.
affinities3 Probe affinities for another extra group of probes whoes expected non-specific binding intensity is to be predicted.

Value

a vector of same length as x.

Author(s)

Rafeal Irizarry, Zhijin (Jean) Wu

See Also

gcrma


[Package gcrma version 2.2.0 Index]