spotUnique {genArise}R Documentation

Replicate filtering

Description

We consider replicate measures of two samples and adjust the log(ratio,2) measures for each gene so that the transformed values are equal. To do this we take the geometric mean.\ This procedure can be extended to averaging over n replicates.

Usage

spotUnique(mySpot)

Arguments

mySpot Spot object for one microarray.

Value

Spot object without duplicates

Examples

data(Simon)
c.spot <- bg.correct(Simon)
f.spot <- filter.spot(c.spot)
spotUnique(mySpot = f.spot)

[Package genArise version 1.0.0 Index]