genefilter: filter genes


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Documentation for package `genefilter' version 1.8.0

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allNA A filter function to determine if all elements of a vector are NA.
Anova A filter function for Analysis of Variance
anyNA A filter function to determine if all elements of a vector are NA.
colFtests t-tests and F-tests for rows or columns of a matrix
colttests t-tests and F-tests for rows or columns of a matrix
coxfilter A filter function for univariate Cox regression.
cv A filter function for the coefficient of variation.
eSet A function to filter an eSet object
eSetFilter A function to filter an eSet object
fastT t-tests and F-tests for rows or columns of a matrix
filterfun Creates a first FALSE exiting function from the list of filter functions it is given.
gapFilter A filter to select genes based on there being a gap.
genefilter A function to filter genes.
genefinder Finds genes that have similar patterns of expression.
genefinder,exprSet,vector-method Finds genes that have similar patterns of expression.
genefinder,matrix,vector-method Finds genes that have similar patterns of expression.
genescale Scales a matrix or vector.
getFilterNames A function to filter an eSet object
getFuncDesc A function to filter an eSet object
getRdAsText A function to filter an eSet object
isESet A function to filter an eSet object
kOverA A filter function for k elements larger than A.
maxA A filter function to filter according to the maximum.
parseArgs A function to filter an eSet object
parseDesc A function to filter an eSet object
pOverA A filter function to filter according to the proportion of elements larger than A.
rowFtests t-tests and F-tests for rows or columns of a matrix
rowpAUCs Rowwise ROC and pAUC
rowSds Row standard deviation of a numeric array
rowttests t-tests and F-tests for rows or columns of a matrix
setESetArgs A function to filter an eSet object
shorth Midpoint of the shorth
showESet A function to filter an eSet object
tdata A small test dataset of Affymetrix Expression data.
ttest A filter function for a t.test