Grapics related functions for Bioconductor


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Documentation for package `geneplotter' version 1.8.0

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alongChrom A function for plotting expression data from an exprset for a given chromosome.
amplicon.plot Create an amplicon plot
buildACMainLabel A function for plotting expression data from an exprset for a given chromosome.
cColor A function for marking specific probes on a cPlot.
closeHtmlPage Open and close an HTML file for writing.
cPlot A plotting function for chromosomes.
cScale A function for mapping chromosome length to a number of points.
cullACXPoints A function for plotting expression data from an exprset for a given chromosome.
dChip.colors A function to get the Red-Blue color scheme used by dChip
defMapFun A function to plot a graph colored by expression data
densCols Scatterplots with smoothed densities color representation
dispACXaxis A function for plotting expression data from an exprset for a given chromosome.
doACCumPlot A function for plotting expression data from an exprset for a given chromosome.
doACImagePlot A function for plotting expression data from an exprset for a given chromosome.
doACLocalPlot A function for plotting expression data from an exprset for a given chromosome.
doACMatPlot A function for plotting expression data from an exprset for a given chromosome.
emptyACPlot A function for plotting expression data from an exprset for a given chromosome.
eset133a A dataset of class exprSet
fixACPhysPoints A function for plotting expression data from an exprset for a given chromosome.
getACClosestPos A function for plotting expression data from an exprset for a given chromosome.
getACDataEnv A function for plotting expression data from an exprset for a given chromosome.
getACExprs A function for plotting expression data from an exprset for a given chromosome.
getACGeneSyms A function for plotting expression data from an exprset for a given chromosome.
getACPlotLabs A function for plotting expression data from an exprset for a given chromosome.
getACStrandVals A function for plotting expression data from an exprset for a given chromosome.
GetColor A function to get the Red-Blue color scheme used by dChip
getPlotExpressionColors A function to plot a graph colored by expression data
greenred.colors A function to get the Red-Blue color scheme used by dChip
highlightACDups A function for plotting expression data from an exprset for a given chromosome.
histStack Stacked histogram
identifyLines A function for identifying sample lines on an alongChrom() plot.
imageMap Write an HTML IMG tag together with a MAP image map.
imageMap,matrix,connection,list,character-method Write an HTML IMG tag together with a MAP image map.
imageMap,matrix-method Write an HTML IMG tag together with a MAP image map.
imageMap-methods Write an HTML IMG tag together with a MAP image map.
limitACXRange A function for plotting expression data from an exprset for a given chromosome.
make.chromOrd Make a chromOrd object
Makesense Produce Smoothed Sense/Anti-sense For All Chromosomes
Makesense,exprSet-method Produce Smoothed Sense/Anti-sense For All Chromosomes
Makesense,matrix-method Produce Smoothed Sense/Anti-sense For All Chromosomes
openHtmlPage Open and close an HTML file for writing.
plotChr Plot Smoothed Sense/Anti-sense of Specified Chromosomes
plotExpressionGraph A function to plot a graph colored by expression data
saveeps Save the contents of the current graphics device to a file
savepdf Save the contents of the current graphics device to a file
savepng Save the contents of the current graphics device to a file
savetiff Save the contents of the current graphics device to a file
scaleACData A function for plotting expression data from an exprset for a given chromosome.
smoothScatter Scatterplots with smoothed densities color representation