Testing Association of a Group of Genes with a Clinical Variable


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Documentation for package `globaltest' version 3.2.0

User Guides and Package Vignettes

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Help Pages

checkerboard Checkerboard plot for Global Test
exampleX Example (simulated) expression data for package "globaltest".
exampleY Example (simulated) clinical variable for package "globaltest".
geneplot Gene Plot for Global Test
globaltest Global Test
gt.barplot-class Class "gt.barplot" for results of the functions geneplot and sampleplot
gt.result-class Class "gt.result" for results of the function globaltest
hist,gt.result-method Class "gt.result" for results of the function globaltest
length,gt.barplot-method Class "gt.barplot" for results of the functions geneplot and sampleplot
length,gt.result-method Class "gt.result" for results of the function globaltest
names,gt.barplot-method Class "gt.barplot" for results of the functions geneplot and sampleplot
names,gt.result-method Class "gt.result" for results of the function globaltest
names<-,gt.result-method Class "gt.result" for results of the function globaltest
p.value Class "gt.result" for results of the function globaltest
p.value,gt.result-method Class "gt.result" for results of the function globaltest
permutations Permutations version of the Global Test
plot,gt.barplot-method Class "gt.barplot" for results of the functions geneplot and sampleplot
regressionplot Regression Plot for Global Test
result Class "gt.result" for results of the function globaltest
result,gt.barplot-method Class "gt.barplot" for results of the functions geneplot and sampleplot
result,gt.result-method Class "gt.result" for results of the function globaltest
sampleplot Sample Plot for Global Test
sampling Sampling random 'pathways' for the Global Test
scale,gt.barplot-method Class "gt.barplot" for results of the functions geneplot and sampleplot
show,gt.barplot-method Class "gt.barplot" for results of the functions geneplot and sampleplot
show,gt.result-method Class "gt.result" for results of the function globaltest
sort,gt.result,ANY,ANY,ANY,ANY,logical-method Class "gt.result" for results of the function globaltest
sort,gt.result,ANY,ANY,ANY,ANY,missing-method Class "gt.result" for results of the function globaltest
z.score Class "gt.barplot" for results of the functions geneplot and sampleplot
z.score,gt.barplot-method Class "gt.barplot" for results of the functions geneplot and sampleplot
[,gt.barplot-method Class "gt.barplot" for results of the functions geneplot and sampleplot
[,gt.result-method Class "gt.result" for results of the function globaltest