hgu95av2PFAM {hgu95av2}R Documentation

Map Manufacturer IDs to Pfam ID

Description

hgu95av2PFAM is an R environment that provides mappings between a manufacturer id and the associated Pfam ids.

Details

Each manufacturer id maps to a named vector of Pfam ids. The name for each Pfam id is the IPI accession numbe where this Pfam id is found.

If the Pfam is a named NA, it means that the associated Entrez Gene id of this manufacturer id is found in an IPI entry of the IPI database, but there is no Pfam id in the entry.

If the Pfam is a non-named NA, it means that the associated Entrez Gene id of this manufacturer id is not found in any IPI entry of the IPI database.

References

Kersey P. J., Duarte J., Williams A., Karavidopoulou Y., Birney E., Apweiler R. The International Protein Index: An integrated database for proteomics experiments. Proteomics 4(7): 1985-1988 (2004) http://www.ebi.ac.uk/IPI/IPIhelp.html

Examples

        # Convert to a list
        xxx <- as.list(hgu95av2PFAM)
        # randomly display 10 probes
        xxx[sample(1:length(xxx), 10)]

[Package hgu95av2 version 1.10.0 Index]