hgu95av2UNIGENE {hgu95av2}R Documentation

Map between Manufacturer Identifiers and UniGene cluster identifiers

Description

hgu95av2UNIGENE is an R environment that provides mappings between manufacturer ids and UniGene ids.

Details

Each manufacturer id is mapped to a UniGene id. An NA is reported if the manufacturer id cannot be mapped to UniGene at this time.

A UniGene id represents a cluster of sequences of a gene. Using UniGene ids one can query the UniGene database for information about the sequences or the LocusLink database for information about the genes.

Mappings were based on data provided by:

Entrez Gene:http://gopher5/compbio/annotationSourceData/ftp.ncbi.nlm.nih.gov/gene/DATA/. Built: Source data downloaded from Entrez Gene on Tue Oct 4 21:15:59 2005

Package built Tue Oct 4 21:31:35 2005

References

http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene

Examples

    # Convert the environment to a list
    xx <- as.list(hgu95av2UNIGENE)
    # Remove probe ids that do no map to any UniGene id
    xx <- xx[!is.null(xx)]
    if(length(xx) > 0){
        # The UniGene ids for the first two elements of XX
        xx[1:2]
        # Get the first one
        xx[[1]]
    }

[Package hgu95av2 version 1.10.0 Index]