Hierarchical Ordered Partitioning and Collapsing Hybrid (HOPACH)


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Documentation for package `hopach' version 1.0

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boothopach functions to perform non-parametric bootstrap resampling of hopach clustering results
bootmedoids functions to perform non-parametric bootstrap resampling of hopach clustering results
bootplot function to make a barplot of bootstrap estimated cluster membership probabilities
correlationordering function to compute empirical correlation between distance in a list and distance by a metric
dissmatrix functions to compute pair wise distances between vectors
dissvector functions to compute pair wise distances between vectors
distancematrix functions to compute pair wise distances between vectors
distancevector functions to compute pair wise distances between vectors
dplot function to make a pseudo-color image of a distance matrix with the row and column ordering based on HOPACH clustering results.
hopach function to perform HOPACH hierarchical clustering
improveordering function to compute empirical correlation between distance in a list and distance by a metric
labelstomss Functions to compute silhouettes and split silhouettes
labelstosil Functions to compute silhouettes and split silhouettes
medstosil Functions to compute silhouettes and split silhouettes
msscheck Functions to compute silhouettes and split silhouettes
silcheck Functions to compute silhouettes and split silhouettes
vectmatrix functions to compute pair wise distances between vectors