Exploratory analysis for two-color spotted microarray data


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Documentation for package `marray' version 1.8.0

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A B C D F G H I L M O P Q R S T U V W misc

-- A --

addLines Scatter-plots for cDNA microarray spot statistics
addPoints Scatter-plots for cDNA microarray spot statistics
addText Scatter-plots for cDNA microarray spot statistics
as Coerce an object to belong to a given microarray class

-- B --

boxplot,marrayNorm-method Boxplots for cDNA microarray spot statistics
boxplot,marrayRaw-method Boxplots for cDNA microarray spot statistics

-- C --

cbind,marrayNorm-method Class "marrayNorm", classes and methods for post-normalization cDNA microarray intensity data
cbind,marrayRaw-method Class "marrayRaw", classes and methods for pre-normalization cDNA microarray intensity data
cbind.marrayNorm Combine marrayRaw, marrayNorm or marrayInfo Objects
cbind.marrayRaw Combine marrayRaw, marrayNorm or marrayInfo Objects
checkTargetInfo Verifying the order between intensities matrix and target file information
coerce Coerce an object to belong to a given microarray class
coerce,marrayRaw,marrayNorm-method Class "marrayNorm", classes and methods for post-normalization cDNA microarray intensity data
coerce-methods Coerce an object to belong to a given microarray class
controlCode Generating a vector recording the control status of the spotted probe sequences.
cor.na Basic Statistical Functions for Handling Missing Values

-- D --

dim.marrayInfo Retrieve the Dimensions of an marrayRaw, marrayNorm or marrayInfo Object
dim.marrayNorm Retrieve the Dimensions of an marrayRaw, marrayNorm or marrayInfo Object
dim.marrayRaw Retrieve the Dimensions of an marrayRaw, marrayNorm or marrayInfo Object

-- F --

findID Find ID when given an accession number
fish.gal Gene expression data from Swirl zebrafish cDNA microarray experiment

-- G --

gsubAnchor Internal marray functions

-- H --

htmlPage Display gene list as a HTML page

-- I --

image,marrayNorm-method Color image for cDNA microarray spot statistics
image,marrayRaw-method Color image for cDNA microarray spot statistics

-- L --

length.na Basic Statistical Functions for Handling Missing Values
lines,marrayNorm-method Scatter-plots for cDNA microarray spot statistics
lines,marrayRaw-method Scatter-plots for cDNA microarray spot statistics
log.na Basic Statistical Functions for Handling Missing Values

-- M --

ma2D Stratified bivariate robust local regression
maA Class "marrayNorm", classes and methods for post-normalization cDNA microarray intensity data
maA,marrayNorm-method Class "marrayNorm", classes and methods for post-normalization cDNA microarray intensity data
maA,marrayRaw-method Class "marrayRaw", classes and methods for pre-normalization cDNA microarray intensity data
maA<-,marrayNorm,matrix-method Class "marrayNorm", classes and methods for post-normalization cDNA microarray intensity data
maBoxplot Boxplots for cDNA microarray spot statistics
maColorBar Calibration bar for color images
maCompCoord Generate grid and spot matrix coordinates
maCompInd Generate spot indices
maCompLayout Generate a marrayLayout object
maCompNormA Weights for composite normalization
maCompNormEq Weights for composite normalization
maCompPlate Generate plate IDs
maControls Class "marrayLayout", classes and methods for layout parameters of cDNA microarrays
maControls,marrayLayout-method Class "marrayLayout", classes and methods for layout parameters of cDNA microarrays
maControls,marrayNorm-method Class "marrayNorm", classes and methods for post-normalization cDNA microarray intensity data
maControls,marrayRaw-method Class "marrayRaw", classes and methods for pre-normalization cDNA microarray intensity data
maControls<-,marrayLayout-method Class "marrayLayout", classes and methods for layout parameters of cDNA microarrays
maControls<-,marrayNorm-method Class "marrayNorm", classes and methods for post-normalization cDNA microarray intensity data
maControls<-,marrayRaw-method Class "marrayRaw", classes and methods for pre-normalization cDNA microarray intensity data
maCoord2Ind Convert grid and spot matrix coordinates to spot indices
maDefaultPar Default graphical parameters for microarray objects
maDotsDefaults Replace graphical default parameters by user supplied parameters
maDotsMatch Replace default arguments of a function by user supplied values
maGb Class "marrayRaw", classes and methods for pre-normalization cDNA microarray intensity data
maGb,marrayRaw-method Class "marrayRaw", classes and methods for pre-normalization cDNA microarray intensity data
maGb<-,marrayRaw,matrix-method Class "marrayRaw", classes and methods for pre-normalization cDNA microarray intensity data
maGb<-,marrayRaw,NULL-method Class "marrayRaw", classes and methods for pre-normalization cDNA microarray intensity data
maGenControls Generating a vector recording the control status of the spotted probe sequences.
maGeneTable Table of spot coordinates and gene names
maGf Class "marrayRaw", classes and methods for pre-normalization cDNA microarray intensity data
maGf,marrayRaw-method Class "marrayRaw", classes and methods for pre-normalization cDNA microarray intensity data
maGf<-,marrayRaw,matrix-method Class "marrayRaw", classes and methods for pre-normalization cDNA microarray intensity data
maGnames Class "marrayRaw", classes and methods for pre-normalization cDNA microarray intensity data
maGnames,marrayNorm-method Class "marrayNorm", classes and methods for post-normalization cDNA microarray intensity data
maGnames,marrayRaw-method Class "marrayRaw", classes and methods for pre-normalization cDNA microarray intensity data
maGnames<-,marrayNorm,marrayInfo-method Class "marrayInfo", description of target samples or spotted probe sequences
maGnames<-,marrayRaw,marrayInfo-method Class "marrayInfo", description of target samples or spotted probe sequences
maGnames<-,marraySpots,marrayInfo-method Class "marrayInfo", description of target samples or spotted probe sequences
maGridCol Class "marrayLayout", classes and methods for layout parameters of cDNA microarrays
maGridCol,marrayLayout-method Class "marrayLayout", classes and methods for layout parameters of cDNA microarrays
maGridCol,marrayNorm-method Class "marrayNorm", classes and methods for post-normalization cDNA microarray intensity data
maGridCol,marrayRaw-method Class "marrayRaw", classes and methods for pre-normalization cDNA microarray intensity data
maGridRow Class "marrayLayout", classes and methods for layout parameters of cDNA microarrays
maGridRow,marrayLayout-method Class "marrayLayout", classes and methods for layout parameters of cDNA microarrays
maGridRow,marrayNorm-method Class "marrayNorm", classes and methods for post-normalization cDNA microarray intensity data
maGridRow,marrayRaw-method Class "marrayRaw", classes and methods for pre-normalization cDNA microarray intensity data
maImage Color image for cDNA microarray spot statistics
maImage.func Color image for cDNA microarray spot statistics
maInd2Coord Convert spot indices to grid and spot matrix coordinates
maInfo Class "marrayInfo", description of target samples or spotted probe sequences
maInfo,marrayInfo-method Class "marrayInfo", description of target samples or spotted probe sequences
maInfo<-,marrayInfo,data.frame-method Class "marrayInfo", description of target samples or spotted probe sequences
maLabels Class "marrayInfo", description of target samples or spotted probe sequences
maLabels,marrayInfo-method Class "marrayInfo", description of target samples or spotted probe sequences
maLabels<-,marrayInfo,character-method Class "marrayInfo", description of target samples or spotted probe sequences
maLabels<-,marrayInfo,numeric-method Class "marrayInfo", description of target samples or spotted probe sequences
maLayout Class "marrayRaw", classes and methods for pre-normalization cDNA microarray intensity data
maLayout,marrayNorm-method Class "marrayNorm", classes and methods for post-normalization cDNA microarray intensity data
maLayout,marrayRaw-method Class "marrayRaw", classes and methods for pre-normalization cDNA microarray intensity data
maLayout<-,marrayNorm,marrayLayout-method Class "marrayLayout", classes and methods for layout parameters of cDNA microarrays
maLayout<-,marrayRaw,marrayLayout-method Class "marrayLayout", classes and methods for layout parameters of cDNA microarrays
maLegendLines Add a legend to a plot
maLG Class "marrayRaw", classes and methods for pre-normalization cDNA microarray intensity data
maLG,marrayNorm-method Class "marrayNorm", classes and methods for post-normalization cDNA microarray intensity data
maLG,marrayRaw-method Class "marrayRaw", classes and methods for pre-normalization cDNA microarray intensity data
maLoess Stratified univariate robust local regression
maLoessLines Add smoothed fits to a plot
maLowessLines Add smoothed fits to a plot
maLR Class "marrayRaw", classes and methods for pre-normalization cDNA microarray intensity data
maLR,marrayNorm-method Class "marrayNorm", classes and methods for post-normalization cDNA microarray intensity data
maLR,marrayRaw-method Class "marrayRaw", classes and methods for pre-normalization cDNA microarray intensity data
maM Class "marrayNorm", classes and methods for post-normalization cDNA microarray intensity data
maM,marrayNorm-method Class "marrayNorm", classes and methods for post-normalization cDNA microarray intensity data
maM,marrayRaw-method Class "marrayRaw", classes and methods for pre-normalization cDNA microarray intensity data
maM<-,marrayNorm,matrix-method Class "marrayNorm", classes and methods for post-normalization cDNA microarray intensity data
maMAD Stratified MAD calculation
maMed Stratified median calculation
maMloc Class "marrayNorm", classes and methods for post-normalization cDNA microarray intensity data
maMloc,marrayNorm-method Class "marrayNorm", classes and methods for post-normalization cDNA microarray intensity data
maMloc<-,marrayNorm,matrix-method Class "marrayNorm", classes and methods for post-normalization cDNA microarray intensity data
maMscale Class "marrayNorm", classes and methods for post-normalization cDNA microarray intensity data
maMscale,marrayNorm-method Class "marrayNorm", classes and methods for post-normalization cDNA microarray intensity data
maMscale<-,marrayNorm,matrix-method Class "marrayNorm", classes and methods for post-normalization cDNA microarray intensity data
maNgc Class "marrayLayout", classes and methods for layout parameters of cDNA microarrays
maNgc,marrayLayout-method Class "marrayLayout", classes and methods for layout parameters of cDNA microarrays
maNgc,marrayNorm-method Class "marrayNorm", classes and methods for post-normalization cDNA microarray intensity data
maNgc,marrayRaw-method Class "marrayRaw", classes and methods for pre-normalization cDNA microarray intensity data
maNgc<-,marrayLayout,numeric-method Class "marrayLayout", classes and methods for layout parameters of cDNA microarrays
maNgc<-,marrayNorm,numeric-method Class "marrayNorm", classes and methods for post-normalization cDNA microarray intensity data
maNgc<-,marrayRaw,numeric-method Class "marrayRaw", classes and methods for pre-normalization cDNA microarray intensity data
maNgr Class "marrayLayout", classes and methods for layout parameters of cDNA microarrays
maNgr,marrayLayout-method Class "marrayLayout", classes and methods for layout parameters of cDNA microarrays
maNgr,marrayNorm-method Class "marrayNorm", classes and methods for post-normalization cDNA microarray intensity data
maNgr,marrayRaw-method Class "marrayRaw", classes and methods for pre-normalization cDNA microarray intensity data
maNgr<-,marrayLayout,numeric-method Class "marrayLayout", classes and methods for layout parameters of cDNA microarrays
maNgr<-,marrayNorm,numeric-method Class "marrayNorm", classes and methods for post-normalization cDNA microarray intensity data
maNgr<-,marrayRaw,numeric-method Class "marrayRaw", classes and methods for pre-normalization cDNA microarray intensity data
maNorm Simple location and scale normalization function
maNorm2D 2D spatial location normalization function
maNormCall Class "marrayNorm", classes and methods for post-normalization cDNA microarray intensity data
maNormCall,marrayNorm-method Class "marrayNorm", classes and methods for post-normalization cDNA microarray intensity data
maNormLoess Intensity dependent location normalization function
maNormMAD MAD scale normalization function
maNormMain Main function for location and scale normalization of cDNA microarray data
maNormMed Median location normalization function
maNormScale Simple scale normalization function
maNotes Class "marrayInfo", description of target samples or spotted probe sequences
maNotes,marrayInfo-method Class "marrayInfo", description of target samples or spotted probe sequences
maNotes,marrayLayout-method Class "marrayLayout", classes and methods for layout parameters of cDNA microarrays
maNotes,marrayNorm-method Class "marrayNorm", classes and methods for post-normalization cDNA microarray intensity data
maNotes,marrayRaw-method Class "marrayRaw", classes and methods for pre-normalization cDNA microarray intensity data
maNotes<-,marrayInfo,character-method Class "marrayInfo", description of target samples or spotted probe sequences
maNotes<-,marrayLayout,character-method Class "marrayLayout", classes and methods for layout parameters of cDNA microarrays
maNotes<-,marrayNorm,character-method Class "marrayNorm", classes and methods for post-normalization cDNA microarray intensity data
maNotes<-,marrayRaw,character-method Class "marrayRaw", classes and methods for pre-normalization cDNA microarray intensity data
maNsamples Class "marrayRaw", classes and methods for pre-normalization cDNA microarray intensity data
maNsamples,marrayNorm-method Class "marrayNorm", classes and methods for post-normalization cDNA microarray intensity data
maNsamples,marrayRaw-method Class "marrayRaw", classes and methods for pre-normalization cDNA microarray intensity data
maNsc Class "marrayLayout", classes and methods for layout parameters of cDNA microarrays
maNsc,marrayLayout-method Class "marrayLayout", classes and methods for layout parameters of cDNA microarrays
maNsc,marrayNorm-method Class "marrayNorm", classes and methods for post-normalization cDNA microarray intensity data
maNsc,marrayRaw-method Class "marrayRaw", classes and methods for pre-normalization cDNA microarray intensity data
maNsc<-,marrayLayout,numeric-method Class "marrayLayout", classes and methods for layout parameters of cDNA microarrays
maNsc<-,marrayNorm,numeric-method Class "marrayNorm", classes and methods for post-normalization cDNA microarray intensity data
maNsc<-,marrayRaw,numeric-method Class "marrayRaw", classes and methods for pre-normalization cDNA microarray intensity data
maNspots Class "marrayLayout", classes and methods for layout parameters of cDNA microarrays
maNspots,marrayLayout-method Class "marrayLayout", classes and methods for layout parameters of cDNA microarrays
maNspots,marrayNorm-method Class "marrayNorm", classes and methods for post-normalization cDNA microarray intensity data
maNspots,marrayRaw-method Class "marrayRaw", classes and methods for pre-normalization cDNA microarray intensity data
maNspots<-,marrayLayout,numeric-method Class "marrayLayout", classes and methods for layout parameters of cDNA microarrays
maNspots<-,marrayNorm,numeric-method Class "marrayNorm", classes and methods for post-normalization cDNA microarray intensity data
maNspots<-,marrayRaw,numeric-method Class "marrayRaw", classes and methods for pre-normalization cDNA microarray intensity data
maNsr Class "marrayLayout", classes and methods for layout parameters of cDNA microarrays
maNsr,marrayLayout-method Class "marrayLayout", classes and methods for layout parameters of cDNA microarrays
maNsr,marrayNorm-method Class "marrayNorm", classes and methods for post-normalization cDNA microarray intensity data
maNsr,marrayRaw-method Class "marrayRaw", classes and methods for pre-normalization cDNA microarray intensity data
maNsr<-,marrayLayout,numeric-method Class "marrayLayout", classes and methods for layout parameters of cDNA microarrays
maNsr<-,marrayNorm,numeric-method Class "marrayNorm", classes and methods for post-normalization cDNA microarray intensity data
maNsr<-,marrayRaw,numeric-method Class "marrayRaw", classes and methods for pre-normalization cDNA microarray intensity data
maNum2Logic Convert a numeric vector of indices to a logical vector
maPalette Microarray color palette
mapGeneInfo Creating URL strings for external database links
maPlate Class "marrayLayout", classes and methods for layout parameters of cDNA microarrays
maPlate,marrayLayout-method Class "marrayLayout", classes and methods for layout parameters of cDNA microarrays
maPlate,marrayNorm-method Class "marrayNorm", classes and methods for post-normalization cDNA microarray intensity data
maPlate,marrayRaw-method Class "marrayRaw", classes and methods for pre-normalization cDNA microarray intensity data
maPlate<-,marrayLayout-method Class "marrayLayout", classes and methods for layout parameters of cDNA microarrays
maPlate<-,marrayNorm-method Class "marrayNorm", classes and methods for post-normalization cDNA microarray intensity data
maPlate<-,marrayRaw-method Class "marrayRaw", classes and methods for pre-normalization cDNA microarray intensity data
maPlot Scatter-plots for cDNA microarray spot statistics
maPlot.func Scatter-plots with fitted curves and text
maPrintTip Class "marrayLayout", classes and methods for layout parameters of cDNA microarrays
maPrintTip,marrayLayout-method Class "marrayLayout", classes and methods for layout parameters of cDNA microarrays
maPrintTip,marrayNorm-method Class "marrayNorm", classes and methods for post-normalization cDNA microarray intensity data
maPrintTip,marrayRaw-method Class "marrayRaw", classes and methods for pre-normalization cDNA microarray intensity data
maRb Class "marrayRaw", classes and methods for pre-normalization cDNA microarray intensity data
maRb,marrayRaw-method Class "marrayRaw", classes and methods for pre-normalization cDNA microarray intensity data
maRb<-,marrayRaw,matrix-method Class "marrayRaw", classes and methods for pre-normalization cDNA microarray intensity data
maRb<-,marrayRaw,NULL-method Class "marrayRaw", classes and methods for pre-normalization cDNA microarray intensity data
maRf Class "marrayRaw", classes and methods for pre-normalization cDNA microarray intensity data
maRf,marrayRaw-method Class "marrayRaw", classes and methods for pre-normalization cDNA microarray intensity data
maRf<-,marrayRaw,matrix-method Class "marrayRaw", classes and methods for pre-normalization cDNA microarray intensity data
marrayInfo Class "marrayInfo", description of target samples or spotted probe sequences
marrayInfo-class Class "marrayInfo", description of target samples or spotted probe sequences
marrayLayout Class "marrayLayout", classes and methods for layout parameters of cDNA microarrays
marrayLayout-class Class "marrayLayout", classes and methods for layout parameters of cDNA microarrays
marrayNorm Class "marrayNorm", classes and methods for post-normalization cDNA microarray intensity data
marrayNorm-class Class "marrayNorm", classes and methods for post-normalization cDNA microarray intensity data
marrayRaw Class "marrayRaw", classes and methods for pre-normalization cDNA microarray intensity data
marrayRaw-class Class "marrayRaw", classes and methods for pre-normalization cDNA microarray intensity data
maSelectGnames Select genes according to the values of a few different statistics
maSpotCol Class "marrayLayout", classes and methods for layout parameters of cDNA microarrays
maSpotCol,marrayLayout-method Class "marrayLayout", classes and methods for layout parameters of cDNA microarrays
maSpotCol,marrayNorm-method Class "marrayNorm", classes and methods for post-normalization cDNA microarray intensity data
maSpotCol,marrayRaw-method Class "marrayRaw", classes and methods for pre-normalization cDNA microarray intensity data
maSpotRow Class "marrayLayout", classes and methods for layout parameters of cDNA microarrays
maSpotRow,marrayLayout-method Class "marrayLayout", classes and methods for layout parameters of cDNA microarrays
maSpotRow,marrayNorm-method Class "marrayNorm", classes and methods for post-normalization cDNA microarray intensity data
maSpotRow,marrayRaw-method Class "marrayRaw", classes and methods for pre-normalization cDNA microarray intensity data
maSub Class "marrayLayout", classes and methods for layout parameters of cDNA microarrays
maSub,marrayLayout-method Class "marrayLayout", classes and methods for layout parameters of cDNA microarrays
maSub,marrayNorm-method Class "marrayNorm", classes and methods for post-normalization cDNA microarray intensity data
maSub,marrayRaw-method Class "marrayRaw", classes and methods for pre-normalization cDNA microarray intensity data
maSub<-,marrayLayout,logical-method Class "marrayLayout", classes and methods for layout parameters of cDNA microarrays
maSub<-,marrayLayout,numeric-method Class "marrayLayout", classes and methods for layout parameters of cDNA microarrays
maSub<-,marrayNorm-method Class "marrayNorm", classes and methods for post-normalization cDNA microarray intensity data
maSub<-,marrayRaw-method Class "marrayRaw", classes and methods for pre-normalization cDNA microarray intensity data
maTargets Class "marrayRaw", classes and methods for pre-normalization cDNA microarray intensity data
maTargets,marrayNorm-method Class "marrayNorm", classes and methods for post-normalization cDNA microarray intensity data
maTargets,marrayRaw-method Class "marrayRaw", classes and methods for pre-normalization cDNA microarray intensity data
maTargets<-,marrayNorm,marrayInfo-method Class "marrayInfo", description of target samples or spotted probe sequences
maTargets<-,marrayRaw,marrayInfo-method Class "marrayInfo", description of target samples or spotted probe sequences
maText Highlight points on a plot
maTop Identify extreme values
maTwoSamples Changing signs for two sample analysis
maW Class "marrayRaw", classes and methods for pre-normalization cDNA microarray intensity data
maW,marrayNorm-method Class "marrayNorm", classes and methods for post-normalization cDNA microarray intensity data
maW,marrayRaw-method Class "marrayRaw", classes and methods for pre-normalization cDNA microarray intensity data
maW<-,marrayNorm,matrix-method Class "marrayNorm", classes and methods for post-normalization cDNA microarray intensity data
maW<-,marrayRaw,matrix-method Class "marrayRaw", classes and methods for pre-normalization cDNA microarray intensity data
mean.na Basic Statistical Functions for Handling Missing Values

-- O --

opVersionID Determine the operon oligo set ID
order.na Basic Statistical Functions for Handling Missing Values

-- P --

plot.gene.cluster Internal marray functions
plot.marrayNorm Scatter-plots for cDNA microarray spot statistics
plot.marrayRaw Scatter-plots for cDNA microarray spot statistics
points,marrayNorm-method Scatter-plots for cDNA microarray spot statistics
points,marrayRaw-method Scatter-plots for cDNA microarray spot statistics
print,marrayInfo-method Class "marrayInfo", description of target samples or spotted probe sequences
print,marrayLayout-method Class "marrayLayout", classes and methods for layout parameters of cDNA microarrays
print,marrayNorm-method Class "marrayNorm", classes and methods for post-normalization cDNA microarray intensity data
print,marrayRaw-method Class "marrayRaw", classes and methods for pre-normalization cDNA microarray intensity data
prod.na Basic Statistical Functions for Handling Missing Values

-- Q --

quantile.na Basic Statistical Functions for Handling Missing Values

-- R --

rbind,marrayInfo-method Class "marrayInfo", description of target samples or spotted probe sequences
rbind.marrayInfo Combine marrayRaw, marrayNorm or marrayInfo Objects
read.Agilent Create objects of class "marrayRaw"
read.fname Internal marray functions
read.Galfile Reading GenePix Gal file
read.GenePix Create objects of class "marrayRaw"
read.marrayInfo Create objects of class marrayInfo
read.marrayLayout Create objects of class marrayLayout
read.marrayRaw Create objects of class "marrayRaw"
read.SMD Create objects of class "marrayRaw"
read.Spot Create objects of class "marrayRaw"
rm.na Remove missing values

-- S --

scale.na Basic Statistical Functions for Handling Missing Values
SFGL Creating URL strings for external database links
show,marrayNorm-method Class "marrayNorm", classes and methods for post-normalization cDNA microarray intensity data
show,marrayRaw-method Class "marrayRaw", classes and methods for pre-normalization cDNA microarray intensity data
show,ShowLargeObject-method Show Large Data Object - class
ShowLargeObject-class Show Large Data Object - class
stat.confband.text Rank genes according to the value of a statistic.
stat.gene.cluster Internal marray functions
stat.gnames Sort Genes According to the Value of a Statistic
sum.na Basic Statistical Functions for Handling Missing Values
summary,marrayInfo-method Class "marrayInfo", description of target samples or spotted probe sequences
summary,marrayLayout-method Class "marrayLayout", classes and methods for layout parameters of cDNA microarrays
summary,marrayNorm-method Class "marrayNorm", classes and methods for post-normalization cDNA microarray intensity data
summary,marrayRaw-method Class "marrayRaw", classes and methods for pre-normalization cDNA microarray intensity data
summary-methods Printing summary methods for microarray objects
swirl Gene expression data from Swirl zebrafish cDNA microarray experiment
swirl.1.spot Gene expression data from Swirl zebrafish cDNA microarray experiment
swirl.2.spot Gene expression data from Swirl zebrafish cDNA microarray experiment
swirl.3.spot Gene expression data from Swirl zebrafish cDNA microarray experiment
swirl.4.spot Gene expression data from Swirl zebrafish cDNA microarray experiment
SwirlSample Gene expression data from Swirl zebrafish cDNA microarray experiment

-- T --

table2html Display gene list as a HTML page
tablegen Internal marray functions
text,marrayNorm-method Scatter-plots for cDNA microarray spot statistics
text,marrayRaw-method Scatter-plots for cDNA microarray spot statistics

-- U --

UCBFGL Creating URL strings for external database links
URLstring Creating URL strings for external database links

-- V --

var.na Basic Statistical Functions for Handling Missing Values

-- W --

widget.mapGeneInfo Creating URL strings for external database links
widget.marrayInfo Create objects of class marrayInfo
widget.marrayLayout Create objects of class marrayLayout
widget.marrayRaw Create objects of class "marrayRaw"
widget.TwoSamples Changing signs for two sample analysis
write.list Data Output
write.marray Data Output
write.xls Data Output

-- misc --

[ Subsetting methods for microarray objects
[,marrayInfo-method Class "marrayInfo", description of target samples or spotted probe sequences
[,marrayLayout-method Class "marrayLayout", classes and methods for layout parameters of cDNA microarrays
[,marrayNorm-method Class "marrayNorm", classes and methods for post-normalization cDNA microarray intensity data
[,marrayRaw-method Class "marrayRaw", classes and methods for pre-normalization cDNA microarray intensity data
[-methods Subsetting methods for microarray objects