Basic classes and methods for mass spectrometric mass list manipulation.


[Package List] [Top]

Documentation for package `msbase' version 1.0.0

User Guides and Package Vignettes

Read overview or browse directory.

Help Pages

A C F G H I L M N P R S U W misc

-- A --

assym,numeric-method Class "numeric"

-- C --

coerce,ANY,numeric-method Class "numeric"
coerce,List,list-method Class "List"
coerce,Massvector,data.frame-method Class "Massvector"
coerce,Massvector,list-method Class "Massvector"
coerce,Massvector,numeric-method Class "Massvector"
coerce,Massvectorlist,data.frame-method Class "Massvectorlist"
coerce,Massvectorlist,matrix-method Class "Massvectorlist"
coerce<-,List,list-method Class "List"
col.plot,Massvectorlist-method Class "Massvectorlist"

-- F --

fbinary,list,NULL-method Methods for Function ``fbinary'' in Package `msbase'
fbinary,Massvector,Massvector-method Methods for Function ``fbinary'' in Package `msbase'
fbinary,Massvectorlist,Massvector-method Methods for Function ``fbinary'' in Package `msbase'
fbinary,Massvectorlist,NULL-method Methods for Function ``fbinary'' in Package `msbase'
fbinary,numeric,numeric-method Methods for Function ``fbinary'' in Package `msbase'
fbinary-methods Methods for Function ``fbinary'' in Package `msbase'
fcor,Massvector,Massvector-method Methods for Function ``fcor'' in Package `msbase'
fcor,Massvectorlist,Massvector-method Methods for Function ``fcor'' in Package `msbase'
fcor,Massvectorlist,NULL-method Methods for Function ``fcor'' in Package `msbase'
fcor-methods Methods for Function ``fcor'' in Package `msbase'
fdist,Massvector,Massvector-method Methods for Function ``fdist'' in Package `msbase'
fdist,Massvectorlist,Massvector-method Methods for Function ``fdist'' in Package `msbase'
fdist,Massvectorlist,NULL-method Methods for Function ``fdist'' in Package `msbase'
fdist-methods Methods for Function ``fdist'' in Package `msbase'
fintersect,Massvector,Massvector-method Class "Massvector"
fintersect,numeric,numeric-method Class "numeric"
fis.element,Massvector,Massvector-method Class "Massvector"
fis.element,numeric,numeric-method Class "numeric"
fm,numeric-method Class "numeric"
fmatch,Massvector,Massvector-method Class "Massvector"
fmatch,numeric,numeric-method Class "numeric"
fmatchall,Massvector,Massvector-method Class "Massvector"
fmatchall,numeric,numeric-method Class "numeric"
fsetdiff,Massvector,Massvector-method Class "Massvector"
fsetdiff,Massvectorlist,Massvector-method Class "Massvectorlist"
fsetdiff,numeric,numeric-method Class "numeric"
fsetequal,Massvector,Massvector-method Class "Massvector"
fsetequal,numeric,numeric-method Class "numeric"
funion,Massvector,Massvector-method Class "Massvector"
funion,numeric,numeric-method Class "numeric"

-- G --

gamasses,Massvector-method Class "Massvector"
gamasses,Massvectorlist-method Class "Massvectorlist"

-- H --

hg,numeric-method Class "numeric"
hist,Massvector-method Class "Massvector"
hist,Massvectorlist-method Class "Massvectorlist"

-- I --

image,Massvector-method Class "Massvector"
image,Mlist-method Class "Mlist"
initialize,Massvector-method Class "Massvector"
initialize,Massvectorlist-method Class "Massvectorlist"

-- L --

length,Massvector-method Class "Massvector"
List-class Class "List"
listdist,list-method compute object of class ``dist'' from list.
listdist-methods compute object of class ``dist'' from list.

-- M --

Massvector-class Class "Massvector"
Massvectorlist-class Class "Massvectorlist"
Mlist-class Class "Mlist"
mvscale,Massvector-method Class "Massvector"
mvscale,Massvectorlist-method Class "Massvectorlist"

-- N --

names,Mlist-method Class "Mlist"
names<-,Mlist-method Class "Mlist"
nrmatch,Massvector,Massvector-method Class "Massvector"
nrmatch,Massvectorlist,Massvector-method Class "Massvectorlist"
nrmatch,Massvectorlist,NULL-method Class "Massvectorlist"
nrmatch,numeric,numeric-method Class "numeric"
numeric-class Class "numeric"

-- P --

pep.plot,Massvectorlist,missing-method Class "Massvectorlist"
pldata 18 Peak-lists
plot,Massvector,Massvector-method Class "Massvector"
plot,Massvector,missing-method Class "Massvector"
plot,Massvectorlist,missing-method Class "Massvectorlist"

-- R --

readBruker,Massvector-method Class "Massvector"
readBruker,Massvectorlist-method Class "Massvectorlist"
readMV,Massvector,character-method Class "Massvector"
readMV,Massvectorlist,character-method Class "Massvectorlist"
rmi,numeric-method Class "numeric"

-- S --

show,Massvector-method Class "Massvector"
show,Massvectorlist-method Class "Massvectorlist"
subset,Mlist-method Class "Mlist"
summary,Massvector-method Class "Massvector"

-- U --

unlist,Massvectorlist-method Class "Massvectorlist"

-- W --

writeMV,Massvector,character-method Class "Massvector"
writeMV,Massvectorlist,character-method Class "Massvectorlist"

-- misc --

[,List-method Class "List"
[,Massvector-method Class "Massvector"
[,Massvectorlist-method Class "Massvectorlist"
[<-,List-method Class "List"
[<-,Massvectorlist-method Class "Massvectorlist"
[[<-,List-method Class "List"
[[<-,Massvectorlist-method Class "Massvectorlist"