AAAlphabet-class {pairseqsim}R Documentation

Class "AAAlphabet" Amino Acid Alphabet

Description

Chars alowed in a protein sequence. It is used by the method initialize of class AASequence to check if the chars in the sequence are known (recognized by the package).

Objects from the Class

Objects can be created by calls of the form new("AAAlphabet", ...).

Slots

.Data:
Object of class "character" Chars allowed in protein sequences
info:
Object of class "character" "AAAlphabet"

Extends

Class "character", directly.

Methods

levels
signature(x = "AAAlphabet"): internal
show
signature(object = "AAAlphabet"): show

Author(s)

Witold E. Wolski witek96@users.sourceforge.net

References

http://r4proteomics.sourcefroge.net

See Also

Examples

new("AAAlphabet")

[Package pairseqsim version 1.0.4 Index]