AASequenceList-class {pairseqsim}R Documentation

Class "AASequenceList" - Container

Description

Container for objects of calss AASequence. The AASequences in the list can be accessed and manipulated like normal list elements.

Objects from the Class

Objects can be created by calls of the form new("AASequenceList", ...).

Slots

.Data:
Object of class "list" : list of AASequence objects.
info:
Object of class "character" : info character

Extends

Class "list", directly.

Methods

[
signature(x = "AASequenceList"): create subset AASequenceList
[[<-
signature(x = "AASequenceList"): assign AASequence
[<-
signature(x = "AASequenceList"): replace subset of AASequenceList
readFasta
signature(object = "AASequenceList"): read file in FASTA format.
salign
signature(obj1 = "AASequenceList", obj2 = "NULL"): see: salign
salign
signature(obj1 = "AASequenceList", obj2 = "AASequence"): see: salign
salign
signature(obj1 = "AASequence", obj2 = "AASequenceList"): see: salign

Author(s)

Wolski E. Witold witek96@users.sourceforge.net

References

http://users.sourceforge.net

See Also

salign-methods, or readFasta-methods

Examples

data(sequlist)
sequlist[1:2]
sequlist[[1]]
sequlist[1:2]<-sequlist[3:4]

[Package pairseqsim version 1.0.4 Index]