max.scantwo {qtl}R Documentation

Maximum peak in two-dimensional genome scan

Description

Print the maximum joint LOD and interaction LODs in the results of scantwo.

Usage

max.scantwo(..., na.rm=TRUE)

Arguments

... An object of class scantwo, the output of the function scantwo. Note that while multiple objects may be input, only the first is considered.
na.rm A logical indicating whether missing values should be removed.

Value

An object of class summary.scantwo, to be printed by print.summary.scantwo. Pairs of loci that have the maximum joint and interaction LOD, in the two-dimensional scan.

Author(s)

Karl W Broman, kbroman@jhsph.edu

See Also

scantwo, plot.scantwo, summary.scantwo

Examples

data(fake.f2)
fake.f2 <- calc.genoprob(fake.f2, step=10)
out.2dim <- scantwo(fake.f2, method="hk", chr=c(1,6,13))
max(out.2dim)

[Package qtl version 0.98-57 Index]