qsummary {qvalue}R Documentation

Display qvalue object

Description

Display summary information for a qvalue object.

Usage

qsummary(qobj, cuts = c(1e-04, 0.001, 0.01, 0.025, 0.05, 0.1, 1),
             digits = getOption("digits"), ...)
## S3 method for class 'qvalue':
summary(object, ...)

Arguments

qobj, object Qvalue object
cuts Vector of significance value to use for table (optional)
digits Significant digits to display (optional)
... Any other arguments

Details

qsummary shows the original call, estimated proportion of true null hypotheses, and a table comparing the number of significant calls for the raw p-values and for the calculated q-values using a set of cutoffs given by cuts.

Value

Invisibly returns the original object.

Author(s)

Alan Dabney adabney@u.washington.edu and Gregory R. Warnes gregory_r_warnes@groton.pfizer.com

See Also

qvalue, qplot, qwrite, qvalue.gui

Examples

## Not run: 
qobj <- qvalue(p)
print(qobj)
summary(qobj, cuts=c(0.01, 0.05))
## End(Not run)

[Package qvalue version 1.1 Index]