qwrite {qvalue}R Documentation

Write the results of the q-value object qobj to a file

Description

Write the results of the q-value object qobj to a file.

Usage

qwrite(qobj, filename = "my-qvalue-results.txt")

Arguments

qobj Qvalue object
filename Output filename (optional)

Details

The output file lists the estimate of pi_0, which is the proportion of true null hypotheses. It also lists each p-value and corresponding q-value, one per line. If an FDR significance level was specified in the call to qvalue, the significance level is printed below the estimate of pi_0, and an indicator of significance is included as a third column for each p-value and q-value.

Value

Nothing of interest.

Author(s)

Alan Dabney adabney@u.washington.edu and John D. Storey jstorey@u.washington.edu

See Also

qvalue, qplot, qsummary, qvalue.gui

Examples

## Not run: 
p <- scan("pvalues.txt")
qobj <- qvalue(p)
qplot(qobj)
qwrite(qobj, filename="myresults.txt")
## End(Not run)

[Package qvalue version 1.1 Index]