Structured Analysis of Microarray Data


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Documentation for package `stam' version 1.0.3

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G I P S W

-- G --

getGOchildren,character-method Nodes in a Classifier Net by StAM
getGOchildren,stamNode-method Nodes in a Classifier Net by StAM
getGOparents,character-method Nodes in a Classifier Net by StAM
getGOparents,stamNode-method Nodes in a Classifier Net by StAM
getGOterm,character-method Nodes in a Classifier Net by StAM
getGOterm,stamNode-method Nodes in a Classifier Net by StAM
golubTrain.cv Examplar StAM Cross-Validation Results
golubTrain.fit Examplar StAM Model Fit

-- I --

image.stamPrediction Molecular Symptoms Image on StAM Prediction
initialize,stamCV-method Cross Validation Information Generated by StAM
initialize,stamEval-method Results of a Complete StAM Analysis
initialize,stamFit-method Model Fit Generated by StAM
initialize,stamINode-method Inner Nodes in Classifier Nets by StAM
initialize,stamLeaf-method Leaf Nodes in Classifier Nets by StAM
initialize,stamNet-method Classifier Net for StAM
initialize,stamNode-method Nodes in a Classifier Net by StAM
initialize,stamPrediction-method Results of Predictions by StAM

-- P --

plot.stamCV Plots for StAM Cross Validation
plot.stamFit Plots for StAM Model Fit
plot.stamPrediction Scatter Plot on Node Results
print,stamCV-method Cross Validation Information Generated by StAM
print,stamFit-method Model Fit Generated by StAM
print,stamINode-method Inner Nodes in Classifier Nets by StAM
print,stamLeaf-method Leaf Nodes in Classifier Nets by StAM
print,stamNet-method Classifier Net for StAM
print,stamNode-method Nodes in a Classifier Net by StAM
print,stamPrediction-method Results of Predictions by StAM

-- S --

stam.cv Cross Validated Training for StAM
stam.evaluate StAM Evaluation Procedure
stam.fit Fit StAM Model to Training Data
stam.graph.plot Draw StAM Model Fit Graph
stam.net Generate a Classifier Graph for StAM
stam.predict Predict Classifications of New Data
stam.serve StAM server launch and installation
stam.writeHTML Write StAM Output in HTML
stamCV-class Cross Validation Information Generated by StAM
stamEval-class Results of a Complete StAM Analysis
stamFit-class Model Fit Generated by StAM
stamINode-class Inner Nodes in Classifier Nets by StAM
stamLeaf-class Leaf Nodes in Classifier Nets by StAM
stamNet-class Classifier Net for StAM
stamNode-class Nodes in a Classifier Net by StAM
stamPrediction-class Results of Predictions by StAM

-- W --

writeHTML,stamCV-method Cross Validation Information Generated by StAM
writeHTML,stamEval-method Results of a Complete StAM Analysis
writeHTML,stamFit-method Model Fit Generated by StAM
writeHTML,stamINode-method Inner Nodes in Classifier Nets by StAM
writeHTML,stamLeaf-method Leaf Nodes in Classifier Nets by StAM
writeHTML,stamNet-method Classifier Net for StAM
writeHTML,stamNode-method Nodes in a Classifier Net by StAM
writeHTML,stamPrediction-method Results of Predictions by StAM