plot.stamPrediction {stam}R Documentation

Scatter Plot on Node Results

Description

Plots nodewise performance vs. redundancy as well as nodewise sensitivity vs. specificity side by side.

Usage

plot.stamPrediction(x, outfile = NULL, aclass = NULL, 
                    main = NULL, minspec = 0.9, 
                    minsens = 0.1, maxsens = 1, 
                    res = 72, ps = FALSE, pointsize = 12, 
                    ...)

Arguments

x object of class stamPrediction to be plotted
outfile name of output file if postscript or PNG graphics is to be generated. The extension of the file is chosen automatically according to the ps argument. If no outfile is specified, an interactive plot is attempted
aclass the name of the phenotype class of interest, usually the disease class. If set to NULL the first class in lexicographical order is chosen.
main the main title of the plot, generated automatically if left blank
minspec if given the corresponding horizontal line is drawn in the sensitivity vs. specificity plot
minsens if given the corresponding vertical line is drawn in the sensitivity vs. specificity plot
maxsens if given the corresponding vertical line is drawn in the sensitivity vs. specificity plot
res resolution in points per inch
ps if set to TRUE postscript output is generated
pointsize the standard fontsize
... additional arguments to be passed to plot

Author(s)

Claudio Lottaz

See Also

stam.predict


[Package stam version 1.0.3 Index]