stamEval-class {stam}R Documentation

Results of a Complete StAM Analysis

Description

Objects of this class are returned by ctam.evaluate. Results of all steps in a structured analysis of microarray data are stored.

Objects from the Class

Objects can be created by calls of the form new("stamEval", exprs, cv, fit, pred, testset), but using stam.evaluate is recommended.

Slots

chip:
Object of class "character", the name of the chip for which the classifier net is generated.
exprs:
Object of class "matrix", the plain matrix of expression levels [probesets x samples], rownames and colnames are expected to be defined
cv:
Object of class "stamCV", store cross validation results
fit:
Object of class "stamFit", store model fit
pred:
Object of class "stamPrediction", store prediction results
testset:
Object of class "numeric", indices of samples treated as test set. The others are used for trainig.

Methods

writeHTML
signature(x = "stamEval"): generate HTML information on a complete StAM analysis, but using stam.writeHTML is recommended.

Author(s)

Claudio Lottaz

See Also

stam.evaluate, stamCV-class, stamFit-class, stamPrediction-class, stam.writeHTML


[Package stam version 1.0.3 Index]