stamINode-class {stam}R Documentation

Inner Nodes in Classifier Nets by StAM

Description

Objects of this class represent inner nodes of classifier nets as they are generated by structured analysis of microarray data. These nodes only contain children but never hold direct annotations of genes.

Objects from the Class

Objects can be created by calls of the form new("stamINode", ID, GOidx, children).

ID
is the GO identifier as character string
GOidx
environment attributing indices to all GO indentifiers
children
indeces of all children

Exactly one of GOidx and children must be defined, the other set to NULL (default)

Slots

children:
Object of class "numeric", indeces of the node's direct children in the Gene Ontology.
weights:
Object of class "numeric", weights attributed to the node's direct children.

See stamNode-class fot ID, category, replacedParents and supNode.

Extends

Class "stamNode", directly.

Methods

print
signature(x = "stamINode"): print information on the inner node.
writeHTML
signature(x = "stamINode"): generate HTML information on the inner node.

Author(s)

Claudio Lottaz

See Also

stamNode-class, stamLeaf-class


[Package stam version 1.0.3 Index]