xlahomologyHGID {xlahomology}R Documentation

A vector containing all the HomoloGeneIDs for Xenopus laevis

Description

xlahomologyHGID is a vector containing all the HomoloGeneIDs for Xenopus laevis. A HomoloGeneID is a unique identifier used by NCBI to represent a sequence in a given organism

Details

The HomoloGeneIDs can be used to obtain data for all the homologous genes in other organisms that have been identified to have homology relationships with the sequences represented by the HomoloGeneIDs using the environment xlahomologyDATA.

xlahomologyDATA is an environment object with key and value pairs. Keys are HomoloGeneIDs and values are lists of sub-lists for other organisms that have been identified to have homology relationships with the genes represented by the HomoloGeneIDs.

Mappings contained in homology8355 were based on data provided by HomoloGene.

HomoloGene: ftp://ftp.ncbi.nih.gov/pub/HomoloGene/old/hmlg.ftp. Built: HomoloGene built date not available

Packagebuilt Wed Oct 20 16:32:42 2004

References

http://www.ncbi.nih.gov/entrez/query.fcgi?db=homologene

Examples

    require("annotate") || stop("annotate unavailable")
    get(xlahomologyHGID[1], xlahomologyDATA)

[Package xlahomology version 1.6.5 Index]